| Gradle test — failed |
|---|
| jalview.gui.AlignmentPanelTest | testCalculateIdWidth_withMaxWidth | 1688285518690 | 1 |
| testGetVisibleWidth | 1688285518885 | 1 |
| jalview.gui.SeqCanvasTest | testCalculateWrappedGeometry_noAnnotations | 1688285517524 | 0 |
| testCalculateWrappedGeometry_withAnnotations | 1688285517689 | 1 |
| jalview.gui.SeqPanelTest | testFindMousePosition_wrapped_scales_longSequence | 1688285519723 | 234 |
| Gradle test — passed |
|---|
| jalview.analysis.AAFrequencyTest | testCalculate_noProfile | 1688285498235 | 2 |
| testCalculate_withProfile | 1688285498238 | 1 |
| testCompleteConsensus_ignoreGaps_noLogo | 1688285498239 | 0 |
| testCompleteConsensus_includeGaps_showLogo | 1688285498240 | 1 |
| testExtractCdnaProfile | 1688285498241 | 2 |
| testExtractCdnaProfile_countGaps | 1688285498244 | 0 |
| testExtractProfile | 1688285498244 | 1 |
| testExtractProfile_countGaps | 1688285498245 | 1 |
| jalview.analysis.AlignSeqTest | testExtractGaps | 1688285501495 | 3 |
| testIndexEncode_nucleotide | 1688285501498 | 2 |
| testIndexEncode_peptide | 1688285501500 | 1 |
| jalview.analysis.AlignmentAnnotationUtilsTest | testAsList | 1688285501872 | 1 |
| testGetShownHiddenTypes_forSelectionGroup | 1688285501873 | 2 |
| testGetShownHiddenTypes_noSequenceSelected | 1688285501875 | 1 |
| testGetShownHiddenTypes_withGraphGroups | 1688285501876 | 1 |
| testGetVisibleGraphGroups | 1688285501877 | 0 |
| jalview.analysis.AlignmentSorterTest | testSortByFeature_density | 1688285502290 | 0 |
| testSortByFeature_score | 1688285502290 | 3 |
| jalview.analysis.AlignmentUtilsTests | testAddMappedPositions | 1688285509438 | 0 |
| testAddMappedPositions_withStopCodon | 1688285509438 | 0 |
| testAlignAsSameSequences | 1688285509439 | 3 |
| testAlignAsSameSequencesMultipleSubSeq | 1688285509442 | 0 |
| testAlignAs_alternateTranscriptsUngapped | 1688285509443 | 0 |
| testAlignProteinAsDna | 1688285509443 | 2 |
| testAlignProteinAsDna_incompleteStartCodon | 1688285509445 | 0 |
| testAlignSequenceAs_keepIntronGapsOnly | 1688285509445 | 1 |
| testAlignSequenceAs_mappedProteinProtein | 1688285509446 | 0 |
| testAlignSequenceAs_withMapping_noIntrons | 1688285509446 | 1 |
| testAlignSequenceAs_withMapping_withIntrons | 1688285509447 | 0 |
| testAlignSequenceAs_withMapping_withUnmappedProtein | 1688285509447 | 1 |
| testAlignSequenceAs_withTrailingPeptide | 1688285509448 | 0 |
| testExpandContext | 1688285509448 | 8 |
| testExpandContext_annotation | 1688285509456 | 0 |
| testFindCdsPositions | 1688285509457 | 0 |
| testFindCdsPositions_fivePrimeIncomplete | 1688285509457 | 1 |
| testGetSequencesByName | 1688285509458 | 1 |
| testHasCrossRef | 1688285509459 | 1 |
| testHaveCrossRef | 1688285509460 | 0 |
| testIsMappable | 1688285509460 | 1 |
| testMakeCdsAlignment | 1688285509461 | 2 |
| testMakeCdsAlignment_alternativeTranscripts | 1688285509463 | 1 |
| testMakeCdsAlignment_filterProducts | 1688285509464 | 0 |
| testMakeCdsAlignment_multipleProteins | 1688285509465 | 0 |
| testMapCdnaToProtein_forSubsequence | 1688285509466 | 0 |
| testMapCdsToProtein | 1688285509466 | 1 |
| testMapProteinAlignmentToCdna_noXrefs | 1688285509467 | 1 |
| testMapProteinAlignmentToCdna_prioritiseXrefs | 1688285509468 | 0 |
| testMapProteinAlignmentToCdna_withStartAndStopCodons | 1688285509468 | 1 |
| testMapProteinAlignmentToCdna_withXrefs | 1688285509469 | 0 |
| testShowOrHideSequenceAnnotations | 1688285509470 | 0 |
| testTransferFeatures | 1688285509470 | 0 |
| testTransferFeatures_withOmit | 1688285509471 | 0 |
| testTransferFeatures_withSelect | 1688285509471 | 1 |
| testTransferGeneLoci | 1688285509472 | 1 |
| testTranslatesAs | 1688285509473 | 0 |
| jalview.analysis.AnnotationSorterTest | testNoSort_autocalcFirst | 1688285513860 | 0 |
| testSortBySequenceAndType_autocalcFirst | 1688285513860 | 1 |
| testSortBySequenceAndType_autocalcLast | 1688285513861 | 0 |
| testSortByTypeAndSequence_autocalcFirst | 1688285513861 | 0 |
| testSortByTypeAndSequence_autocalcLast | 1688285513861 | 0 |
| testSort_timingPresorted | 1688285513861 | 206 |
| testSort_timingSemisorted | 1688285514068 | 195 |
| testSort_timingUnsorted | 1688285514263 | 85 |
| jalview.analysis.CodingUtilsTest | testDecodeCodon | 1688285516278 | 0 |
| testDecodeNucleotide | 1688285516278 | 0 |
| testEncodeCodon | 1688285516278 | 0 |
| jalview.analysis.ConservationTest | testCalculate_noThreshold | 1688285517376 | 1 |
| testCalculate_threshold | 1688285517377 | 1 |
| testCountConservationAndGaps | 1688285517378 | 0 |
| testRecordConservation | 1688285517379 | 0 |
| testVerdict | 1688285517379 | 1 |
| jalview.analysis.CrossRefTest | testFindXDbRefs | 1688285519412 | 0 |
| testFindXrefSequences_fromDbRefMap | 1688285519412 | 2 |
| testFindXrefSequences_indirectDbrefToNucleotide | 1688285519414 | 1 |
| testFindXrefSequences_indirectDbrefToProtein | 1688285519415 | 0 |
| testFindXrefSequences_noDbrefs | 1688285519416 | 2 |
| testFindXrefSourcesForSequence_proteinToDna | 1688285519418 | 0 |
| testSameSequence | 1688285519418 | 0 |
| testSearchDataset | 1688285519419 | 0 |
| jalview.analysis.DnaTest | testCompareCodonPos | 1688285520857 | 3 |
| testCompareCodonPos_isSymmetric | 1688285520860 | 2 |
| testCompareCodonPos_oneOnly | 1688285520862 | 0 |
| testConvertCodon | 1688285520862 | 0 |
| testGetComplement | 1688285520863 | 0 |
| testReverseCdna | 1688285520863 | 0 |
| testReverseSequence | 1688285520864 | 0 |
| testTranslateCdna_hiddenColumns | 1688285520864 | 1 |
| testTranslateCdna_sequenceOrderIndependent | 1688285520865 | 1 |
| testTranslateCdna_simple | 1688285520866 | 1 |
| testTranslateCdna_withUntranslatableCodons | 1688285520867 | 6 |
| testTranslateCdna_withUntranslatableCodonsAndHiddenColumns | 1688285520873 | 31 |
| jalview.analysis.FinderTest | testFindAll | 1688285521211 | 2 |
| testFindAll_caseSensitive | 1688285521214 | 0 |
| testFindAll_inSelection | 1688285521214 | 1 |
| testFindAll_maximalResultOnly | 1688285521215 | 0 |
| testFindAll_sequenceIds | 1688285521216 | 0 |
| testFindNext | 1688285521217 | 0 |
| testFindNext_inSelection | 1688285521217 | 1 |
| testFind_findAll | 1688285521218 | 0 |
| testFind_findAllInSelectionWithShortSequence | 1688285521218 | 0 |
| testFind_findNext | 1688285521218 | 1 |
| testFind_ignoreHiddenColumns | 1688285521219 | 2 |
| testFind_inDescription | 1688285521221 | 1 |
| testFind_regex | 1688285521222 | 1 |
| testFind_residueNumber | 1688285521223 | 0 |
| testFind_withHiddenColumns | 1688285521224 | 1 |
| testFind_withHiddenColumnsAndSelection | 1688285521225 | 1 |
| jalview.analysis.GeneticCodesTest | testGetCodeTable | 1688285522227 | 0 |
| testGetCodeTables | 1688285522227 | 0 |
| testTranslate | 1688285522228 | 0 |
| testTranslateCanonical | 1688285522229 | 0 |
| testTranslate_nonStandardTableAmbiguityCodes | 1688285522229 | 0 |
| testTranslate_standardTable | 1688285522229 | 0 |
| testTranslate_standardTableAmbiguityCodes | 1688285522230 | 0 |
| jalview.analysis.GroupingTest | testMakeGroupsWithBoth | 1688285522246 | 2 |
| jalview.analysis.ParsePropertiesTest | testGetScoresFromDescription | 1688285527383 | 2 |
| testGetScoresFromDescription_twoScores | 1688285527386 | 0 |
| testGetScoresFromDescription_wordBoundaries | 1688285527387 | 1 |
| jalview.analysis.RnaTest | testGetHelixMap_oneHelix | 1688285527572 | 1 |
| testGetHelixMap_twoHelices | 1688285527573 | 0 |
| testGetMatchingOpeningParenthesis | 1688285527573 | 0 |
| testGetRNASecStrucState | 1688285527573 | 0 |
| testGetSimpleBPs | 1688285527574 | 0 |
| testGetSimpleBPs_unmatchedCloser | 1688285527574 | 0 |
| testGetSimpleBPs_unmatchedOpener | 1688285527575 | 0 |
| testIsCanonicalOrWobblePair | 1688285527575 | 1 |
| testIsCanonicalPair | 1688285527576 | 0 |
| testIsClosingParenthesis | 1688285527576 | 3 |
| testIsOpeningParenthesis | 1688285527579 | 2 |
| testIsRnaSecondaryStructureSymbol | 1688285527582 | 2 |
| jalview.analysis.SeqsetUtilsTest | testSeqFeatureAddition | 1688285527742 | 1 |
| jalview.analysis.SequenceIdMatcherTest | test_seqIdNameEquals | 1688285530893 | 0 |
| jalview.analysis.TestAlignSeq | testExtractGaps | 1688285530988 | 0 |
| testGetMappingForS1 | 1688285530989 | 0 |
| testPrintAlignment | 1688285530990 | 0 |
| jalview.analysis.scoremodels.FeatureDistanceModelTest | testFeatureScoreModel | 1688285538806 | 24 |
| testFeatureScoreModel_HiddenColumns | 1688285538830 | 22 |
| testFeatureScoreModel_hiddenFirstColumn | 1688285538852 | 16 |
| testFindDistances | 1688285538868 | 22 |
| testFindDistances_withParams | 1688285538891 | 16 |
| testFindFeatureAt_PointFeature | 1688285538907 | 18 |
| jalview.analysis.scoremodels.PIDModelTest | testComputePID_matchLongestSequence | 1688285538969 | 0 |
| testComputePID_matchShortestSequence | 1688285538969 | 0 |
| testComputePID_matchesComparisonPID | 1688285538969 | 1 |
| testGetPairwiseScore | 1688285538970 | 0 |
| jalview.analysis.scoremodels.ScoreMatrixTest | testBlosum62_values | 1688285540788 | 6 |
| testBuildSymbolIndex | 1688285540794 | 1 |
| testBuildSymbolIndex_nonAscii | 1688285540795 | 0 |
| testComputePairwiseScores | 1688285540795 | 0 |
| testConstructor | 1688285540796 | 0 |
| testConstructor_gapDash | 1688285540796 | 0 |
| testConstructor_matrixNotSquare | 1688285540796 | 0 |
| testConstructor_matrixTooBig | 1688285540796 | 0 |
| testConstructor_matrixTooSmall | 1688285540796 | 0 |
| testEqualsAndHashCode | 1688285540797 | 0 |
| testGetMatrix | 1688285540797 | 0 |
| testGetMatrixIndex | 1688285540798 | 0 |
| testGetMaximumScore | 1688285540798 | 0 |
| testGetMinimumScore | 1688285540798 | 0 |
| testGetPairwiseScore | 1688285540798 | 0 |
| testGetSize | 1688285540798 | 0 |
| testIsSymmetric | 1688285540798 | 1 |
| testOutputMatrix_html | 1688285540799 | 0 |
| testOutputMatrix_roundTrip | 1688285540799 | 1 |
| testSymmetric | 1688285540800 | 11 |
| testcomputeSimilarity_matchLongestSequence | 1688285540811 | 0 |
| testcomputeSimilarity_matchShortestSequence | 1688285540811 | 0 |
| jalview.analysis.scoremodels.ScoreModelsTest | testConstructor | 1688285541073 | 1 |
| jalview.bin.ArgsParserTest | testContains | 1688285541077 | 0 |
| testGetValue | 1688285541077 | 0 |
| testGetValue_decoded | 1688285541077 | 1 |
| testNextValue | 1688285541078 | 0 |
| jalview.bin.CacheTest | testSetDateProperty | 1688285541107 | 0 |
| testVersionChecker | 1688285541107 | 10002 |
| jalview.bin.CommandLineOperations | reportCurrentWorkingDirectory | 1688285551127 | 0 |
| testAllInputOperations | 1688285551127 | 0 |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testAllInputOperations |
| testHeadlessModeOutputOperations | 1688285567221 | 2548 |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| testHeadlessModeOutputOperations |
| jalview.bin.HiDPISettingTest1 | testHiDPISettingInit | 1688285616129 | 679 |
| jalview.bin.HiDPISettingTest2 | testHiDPISettings | 1688285622074 | 1762 |
| testHiDPISettings |
| testHiDPISettings |
| testHiDPISettings |
| jalview.bin.JalviewLiteTest | testSeparatorListToArray | 1688285623839 | 9 |
| jalview.bin.MemorySettingTest | testGetMemorySetting | 1688285623851 | 5 |
| jalview.commands.EditCommandTest | testAddEdit_groupInsertGaps | 1688285623857 | 0 |
| testAddEdit_multipleDeleteGap | 1688285623857 | 0 |
| testAddEdit_multipleInsertGap | 1688285623857 | 0 |
| testAddEdit_removeAllGaps | 1688285623857 | 0 |
| testAppendEdit_deleteGap | 1688285623857 | 1 |
| testAppendEdit_insertGap | 1688285623858 | 0 |
| testCut | 1688285623858 | 0 |
| testCut_withFeatures | 1688285623858 | 1 |
| testCut_withFeatures5prime | 1688285623859 | 0 |
| testCut_withFeatures_exhaustive | 1688285623859 | 31 |
| testPriorState_multipleInserts | 1688285623891 | 0 |
| testPriorState_removeAllGaps | 1688285623891 | 0 |
| testPriorState_removeGappedCols | 1688285623891 | 0 |
| testPriorState_removeGapsMultipleSeqs | 1688285623892 | 0 |
| testPriorState_singleDelete | 1688285623892 | 0 |
| testPriorState_singleInsert | 1688285623893 | 0 |
| testPriorState_singleInsertWithOffset | 1688285623893 | 0 |
| testReplace | 1688285623894 | 0 |
| testReplaceFirstResiduesWithGaps | 1688285623895 | 0 |
| testReplace_withGaps | 1688285623895 | 0 |
| testUndo_cut | 1688285623895 | 1 |
| testUndo_deleteGap | 1688285623896 | 0 |
| testUndo_insertGap | 1688285623896 | 0 |
| testUndo_multipleCommands | 1688285623896 | 0 |
| testUndo_multipleInsertGaps | 1688285623897 | 0 |
| jalview.commands.TrimRegionCommandTest | testTrimLeft_noColumns | 1688285623899 | 0 |
| testTrimLeft_oneColumn | 1688285623900 | 0 |
| testTrimLeft_withUndoAndRedo | 1688285623900 | 0 |
| testTrimRight_noColumns | 1688285623901 | 0 |
| testTrimRight_oneColumn | 1688285623901 | 0 |
| testTrimRight_withUndoAndRedo | 1688285623902 | 0 |
| jalview.controller.AlignViewControllerTest | testFindColumnsWithFeature | 1688285623902 | 32 |
| testSelectColumnsWithHighlight | 1688285623934 | 18 |
| jalview.datamodel.AlignedCodonFrameTest | testAddMap | 1688285623956 | 0 |
| testCouldReplaceSequence | 1688285623957 | 0 |
| testFindAlignedSequence | 1688285623957 | 0 |
| testGetCoveringCodonMapping | 1688285623957 | 0 |
| testGetCoveringMapping | 1688285623957 | 0 |
| testGetMappedCodons | 1688285623958 | 0 |
| testGetMappedCodons_dnaVariants | 1688285623958 | 0 |
| testGetMappedCodons_forSubSequences | 1688285623958 | 0 |
| testGetMappedRegion | 1688285623958 | 0 |
| testGetMappedRegion_eitherWay | 1688285623958 | 0 |
| testIsRealisableWith | 1688285623959 | 0 |
| testMarkMappedRegion | 1688285623959 | 0 |
| testRealiseWith | 1688285623959 | 0 |
| jalview.datamodel.AlignedCodonIteratorTest | testAnother | 1688285623974 | 0 |
| testNext | 1688285623974 | 0 |
| testNext_incompleteCodon | 1688285623974 | 1 |
| testNext_unmappedPeptide | 1688285623975 | 0 |
| testNext_withOffset | 1688285623975 | 0 |
| jalview.datamodel.AlignedCodonTest | testEquals | 1688285623976 | 0 |
| testToString | 1688285623976 | 0 |
| jalview.datamodel.AlignmentAnnotationTests | testAdjustForAlignment | 1688285623981 | 0 |
| testCopyConstructor | 1688285623981 | 0 |
| testGetDefaultRnaHelixSymbol | 1688285623982 | 0 |
| testIsQuantitative | 1688285623982 | 1 |
| testLiftOver | 1688285623983 | 6 |
| testMakeVisibleAnnotation | 1688285623989 | 0 |
| jalview.datamodel.AlignmentTest | testAddCodonFrame | 1688285624040 | 1 |
| testAddSequencePreserveDatasetIntegrity | 1688285624042 | 1 |
| testAlignAs_cdnaAsProtein | 1688285624044 | 0 |
| testAlignAs_cdnaAsProtein_singleSequence | 1688285624046 | 0 |
| testAlignAs_dnaAsDna | 1688285624048 | 1 |
| testAlignAs_proteinAsCdna | 1688285624050 | 0 |
| testAppend | 1688285624052 | 0 |
| testAssertDatasetIsNormalised | 1688285624054 | 1 |
| testCopyConstructor | 1688285624056 | 1 |
| testCreateDatasetAlignment | 1688285624058 | 0 |
| testCreateDatasetAlignmentWithMappedToSeqs | 1688285624060 | 0 |
| testCreateDataset_updateDbrefMappings | 1688285624062 | 0 |
| testDeleteAllAnnotations_excludingAutocalculated | 1688285624063 | 0 |
| testDeleteAllAnnotations_includingAutocalculated | 1688285624065 | 0 |
| testDeleteHiddenSequence | 1688285624066 | 0 |
| testDeleteSequenceByIndex | 1688285624068 | 0 |
| testDeleteSequenceBySeq | 1688285624070 | 0 |
| testFindAnnotation_byCalcId | 1688285624071 | 0 |
| testFindAnnotations_bySeqLabelandorCalcId | 1688285624073 | 0 |
| testFindGroup | 1688285624074 | 0 |
| testFindOrCreateForNullCalcId | 1688285624076 | 0 |
| testGetVisibleWidth | 1688285624077 | 0 |
| testGetWidth | 1688285624079 | 0 |
| testPadGaps | 1688285624080 | 0 |
| testPropagateInsertions | 1688285624082 | 0 |
| testPropagateInsertionsOverlap | 1688285624084 | 0 |
| testSetDataset_selfReference | 1688285624086 | 0 |
| testSetHiddenColumns | 1688285624087 | 0 |
| testVerifyAlignmentDatasetRefs | 1688285624089 | 5 |
| jalview.datamodel.AlignmentViewTest | testGetVisibleAlignmentGapChar | 1688285624138 | 0 |
| testGetVisibleContigs | 1688285624138 | 13 |
| jalview.datamodel.AllColsIteratorTest | testHasNextAndNext | 1688285624162 | 0 |
| testLastNext | 1688285624162 | 1 |
| testOneElement | 1688285624163 | 0 |
| testRemove | 1688285624163 | 0 |
| jalview.datamodel.AllRowsIteratorTest | testHasNextAndNext | 1688285624276 | 0 |
| testLastNext | 1688285624276 | 1 |
| testOneElement | 1688285624277 | 0 |
| testRemove | 1688285624277 | 0 |
| jalview.datamodel.CigarArrayTest | testConstructor | 1688285624277 | 1 |
| jalview.datamodel.ColumnSelectionTest | testAddElement | 1688285624278 | 0 |
| testCopyConstructor | 1688285624279 | 0 |
| testEquals | 1688285624279 | 0 |
| testFilterAnnotations | 1688285624279 | 1 |
| testGetSelected | 1688285624280 | 0 |
| testGetSelectedRanges | 1688285624281 | 0 |
| testGetSelected_concurrentModification | 1688285624281 | 0 |
| testGetSelected_isReadOnly | 1688285624281 | 0 |
| testHideColumns_withSelection | 1688285624282 | 1 |
| testHideSelectedColumns | 1688285624283 | 0 |
| testInvertColumnSelection | 1688285624284 | 0 |
| testMarkColumns | 1688285624284 | 0 |
| testMarkColumns_extend | 1688285624284 | 0 |
| testMarkColumns_invert | 1688285624284 | 0 |
| testMarkColumns_toggle | 1688285624284 | 0 |
| testMaxColumnSelection | 1688285624284 | 0 |
| testMinColumnSelection | 1688285624284 | 0 |
| testRemoveElement | 1688285624285 | 0 |
| testSetElementsFrom | 1688285624285 | 0 |
| testStretchGroup_expand | 1688285624285 | 0 |
| testStretchGroup_shrink | 1688285624285 | 0 |
| jalview.datamodel.DBRefEntryTest | testEqualRef | 1688285498279 | 2 |
| testIsPrimaryCandidate | 1688285498281 | 1 |
| testUpdateFrom | 1688285498282 | 0 |
| jalview.datamodel.HiddenColumnsCursorTest | testConstructor | 1688285501603 | 0 |
| testFindRegionForColumn | 1688285501604 | 0 |
| testFindRegionForColumn_Visible | 1688285501604 | 0 |
| jalview.datamodel.HiddenColumnsTest | testAdjustForHiddenColumns | 1688285501899 | 0 |
| testBoundedIterator | 1688285501900 | 0 |
| testBoundedStartIterator | 1688285501900 | 1 |
| testCopyConstructor | 1688285501901 | 1 |
| testCopyConstructor2 | 1688285501902 | 0 |
| testEquals | 1688285501902 | 1 |
| testFindColumnPosition | 1688285501903 | 0 |
| testGetNextHiddenBoundary_Left | 1688285501904 | 0 |
| testGetNextHiddenBoundary_Right | 1688285501904 | 0 |
| testGetRegionWithEdgeAtRes | 1688285501904 | 1 |
| testGetSize | 1688285501905 | 0 |
| testGetVisibleColsIterator | 1688285501906 | 1 |
| testGetVisibleStartAndEndIndex | 1688285501907 | 1 |
| testHasHiddenColumns | 1688285501908 | 0 |
| testHasManyHiddenColumns | 1688285501908 | 1 |
| testHashCode | 1688285501909 | 0 |
| testHideColumns | 1688285501909 | 2 |
| testHideColumns_BitSet | 1688285501911 | 0 |
| testHideColumns_BitSet_range | 1688285501912 | 0 |
| testHideColumns_subsumingHidden | 1688285501912 | 1 |
| testHideInsertionsFor | 1688285501913 | 0 |
| testIsVisible | 1688285501914 | 0 |
| testIterator | 1688285501914 | 0 |
| testOffsetByVisibleColumns | 1688285501915 | 0 |
| testRegionsToString | 1688285501915 | 1 |
| testRevealAllHiddenColumns | 1688285501916 | 0 |
| testRevealHiddenColumns | 1688285501916 | 0 |
| testVisibleBlocksVisBoundsIterator | 1688285501917 | 0 |
| testVisibleContigsIterator | 1688285501917 | 1 |
| jalview.datamodel.HiddenSequencesTest | testAdjustForHiddenSeqs | 1688285502296 | 1 |
| testAdjustHeightSequenceAdded | 1688285502297 | 0 |
| testAdjustHeightSequenceDeleted | 1688285502297 | 0 |
| testFindIndexNFromRow | 1688285502297 | 0 |
| testFindIndexWithoutHiddenSeqs | 1688285502298 | 0 |
| testGetFullAlignment | 1688285502298 | 0 |
| testGetHiddenSequence | 1688285502298 | 0 |
| testGetSize | 1688285502299 | 0 |
| testGetWidth | 1688285502299 | 0 |
| testHideShowLastSequences | 1688285502299 | 0 |
| testHideShowSequence | 1688285502299 | 0 |
| testHideShowSequence_withHiddenRepSequence | 1688285502299 | 1 |
| testIsHidden | 1688285502300 | 0 |
| jalview.datamodel.MappedFeaturesTest | testFindProteinVariants | 1688285513097 | 1 |
| jalview.datamodel.MappingTest | testCopyConstructor | 1688285514899 | 0 |
| testIntersectVisContigs | 1688285514899 | 1 |
| testToString | 1688285514900 | 0 |
| jalview.datamodel.MappingTypeTest | testGetFromRatio | 1688285516282 | 1 |
| testGetInverse | 1688285516283 | 0 |
| testGetToRatio | 1688285516284 | 0 |
| jalview.datamodel.MatchTest | testEquals | 1688285517382 | 1 |
| testToString | 1688285517383 | 0 |
| jalview.datamodel.PDBEntryTest | testConstructor_fromDbref | 1688285519421 | 0 |
| testEquals | 1688285519422 | 0 |
| testGetType | 1688285519423 | 0 |
| testSetChainCode | 1688285519423 | 0 |
| testTypeMatches | 1688285519423 | 0 |
| testUpdateFrom | 1688285519424 | 0 |
| jalview.datamodel.RangeElementsIteratorTest | testHasNextAndNextEndHidden | 1688285520905 | 0 |
| testHasNextAndNextNoHidden | 1688285520905 | 0 |
| testHasNextAndNextStartHidden | 1688285520905 | 0 |
| testHasNextAndNextWithHidden | 1688285520905 | 1 |
| testLastNextEndHidden | 1688285520906 | 0 |
| testLastNextNoHidden | 1688285520906 | 0 |
| testLastNextStartHidden | 1688285520906 | 0 |
| testLastNextWithHidden | 1688285520907 | 0 |
| testRemove | 1688285520907 | 0 |
| jalview.datamodel.ResidueCountTest | testAddGap | 1688285521227 | 0 |
| testGetModalCount | 1688285521227 | 0 |
| testGetResiduesForCount | 1688285521227 | 0 |
| testGetSymbolCounts_nucleotide | 1688285521227 | 3 |
| testGetSymbolCounts_peptide | 1688285521230 | 0 |
| testGetTooltip | 1688285521230 | 1 |
| testOverflow | 1688285521231 | 0 |
| testPut | 1688285521231 | 0 |
| testToString | 1688285521231 | 0 |
| test_countNucleotide | 1688285521231 | 1 |
| test_countPeptide | 1688285521232 | 0 |
| test_unexpectedNucleotide | 1688285521232 | 0 |
| test_unexpectedPeptide | 1688285521232 | 0 |
| jalview.datamodel.SearchResultsTest | testAddResult | 1688285522230 | 0 |
| testEquals | 1688285522231 | 0 |
| testEquals_distinctSequences | 1688285522231 | 0 |
| testEquals_orderDiffers | 1688285522231 | 0 |
| testHashcode | 1688285522231 | 1 |
| testInvolvesSequence | 1688285522232 | 0 |
| testMarkColumns | 1688285522232 | 0 |
| testMatchConstructor | 1688285522233 | 0 |
| testMatchContains | 1688285522233 | 0 |
| testToString | 1688285522233 | 0 |
| jalview.datamodel.SeqCigarTest | testFindPosition | 1688285522551 | 0 |
| testSomething | 1688285522552 | 14 |
| jalview.datamodel.SequenceDummyTest | testBecome | 1688285527388 | 0 |
| jalview.datamodel.SequenceFeatureTest | testCopyConstructors | 1688285527584 | 0 |
| testEqualsAndHashCode | 1688285527584 | 6 |
| testGetDetailsReport | 1688285527591 | 1 |
| testGetDetailsReport_virtualFeature | 1688285527592 | 0 |
| testGetStrand | 1688285527593 | 0 |
| testGetValue | 1688285527593 | 0 |
| testIsContactFeature | 1688285527593 | 0 |
| jalview.datamodel.SequenceGroupTest | testAddOrRemove | 1688285527743 | 0 |
| testAddSequence | 1688285527743 | 0 |
| testConstructor_list | 1688285527743 | 1 |
| testContains | 1688285527744 | 0 |
| testCopyConstructor | 1688285527744 | 0 |
| testGetColourScheme | 1688285527744 | 0 |
| testSetContext | 1688285527745 | 0 |
| jalview.datamodel.SequenceTest | testAddAlignmentAnnotation | 1688285530893 | 1 |
| testAddDBRef | 1688285530894 | 0 |
| testAddPDBId | 1688285530894 | 0 |
| testAddSequenceFeatures | 1688285530895 | 0 |
| testCheckValidRange | 1688285530896 | 0 |
| testCopyConstructor_noDataset | 1688285530896 | 0 |
| testCopyConstructor_withDataset | 1688285530897 | 0 |
| testCreateDatasetSequence | 1688285530897 | 0 |
| testDeleteChars | 1688285530897 | 0 |
| testDeleteChars_withDbRefsAndFeatures | 1688285530897 | 0 |
| testDeleteChars_withGaps | 1688285530897 | 1 |
| testDeriveSequence_existingDataset | 1688285530898 | 0 |
| testDeriveSequence_noDatasetGapped | 1688285530899 | 0 |
| testDeriveSequence_noDatasetUngapped | 1688285530899 | 0 |
| testFindFeatures | 1688285530899 | 0 |
| testFindIndex | 1688285530900 | 0 |
| testFindIndex_withCursor | 1688285530900 | 0 |
| testFindPosition | 1688285530900 | 1 |
| testFindPositionMap | 1688285530901 | 0 |
| testFindPosition_withCursor | 1688285530901 | 1 |
| testFindPosition_withCursorAndEdits | 1688285530902 | 0 |
| testFindPositions | 1688285530902 | 1 |
| testGapBitset | 1688285530903 | 0 |
| testGapMap | 1688285530903 | 0 |
| testGetAlignmentAnnotations_forCalcIdAndLabel | 1688285530903 | 0 |
| testGetAlignmentAnnotations_forCalcIdLabelAndDescription | 1688285530903 | 0 |
| testGetAnnotation | 1688285530903 | 0 |
| testGetAnnotation_forLabel | 1688285530904 | 0 |
| testGetCharAt | 1688285530904 | 0 |
| testGetPrimaryDBRefs_nucleotide | 1688285530904 | 0 |
| testGetPrimaryDBRefs_peptide | 1688285530904 | 0 |
| testGetSequence | 1688285530905 | 0 |
| testGetSequenceFeatures | 1688285530905 | 0 |
| testGetStartGetEnd | 1688285530905 | 0 |
| testGetSubsequence | 1688285530905 | 1 |
| testInsertCharAt | 1688285530906 | 0 |
| testInsertGapsAndGapmaps | 1688285530906 | 0 |
| testIsProtein | 1688285530906 | 0 |
| testIsProteinWithXorNAmbiguityCodes | 1688285530906 | 0 |
| testLocateVisibleStartofSequence | 1688285530906 | 1 |
| testReplace | 1688285530907 | 0 |
| testSetDatasetSequence_cascading | 1688285530908 | 0 |
| testSetDatasetSequence_toSelf | 1688285530908 | 0 |
| testSetName | 1688285530908 | 0 |
| testTransferAnnotation | 1688285530909 | 0 |
| testUpdatePDBIds | 1688285530909 | 0 |
| jalview.datamodel.StartRegionIteratorTest | testBasicBoundsIterator | 1688285530987 | 0 |
| testBoundsIteratorUsingCursor | 1688285530987 | 0 |
| testBoundsIteratorUsingNullCursor | 1688285530987 | 1 |
| jalview.datamodel.VisibleContigsIteratorTest | testMultipleVisibleRegions | 1688285538939 | 0 |
| testSimpleVisibleRegions | 1688285538939 | 0 |
| testVisibleRegionsAtHiddenEdges | 1688285538939 | 0 |
| jalview.datamodel.VisibleRowsIteratorTest | testHasNextAndNextEndHidden | 1688285538971 | 1 |
| testHasNextAndNextNoHidden | 1688285538972 | 0 |
| testHasNextAndNextStartHidden | 1688285538972 | 0 |
| testHasNextAndNextWithHidden | 1688285538972 | 0 |
| testLastNextEndHidden | 1688285538973 | 0 |
| testLastNextNoHidden | 1688285538973 | 0 |
| testLastNextStartHidden | 1688285538973 | 0 |
| testLastNextWithHidden | 1688285538973 | 0 |
| testRemove | 1688285538973 | 1 |
| jalview.datamodel.features.FeatureAttributesTest | testAttributeNameComparator | 1688285538975 | 0 |
| testDatatype | 1688285538976 | 0 |
| testGetDescription | 1688285538976 | 0 |
| testGetMinMax | 1688285538976 | 1 |
| jalview.datamodel.features.FeatureMatcherSetTest | testAnd | 1688285540971 | 0 |
| testFromString | 1688285540971 | 1 |
| testGetMatchers | 1688285540972 | 1 |
| testIsEmpty | 1688285540973 | 0 |
| testMatches_byAttribute | 1688285540973 | 0 |
| testMatches_compoundKey | 1688285540973 | 1 |
| testOr | 1688285540974 | 0 |
| testToStableString | 1688285540974 | 0 |
| testToString | 1688285540974 | 1 |
| jalview.datamodel.features.FeatureMatcherTest | testFromString | 1688285541078 | 2 |
| testGetAttribute | 1688285541080 | 0 |
| testGetMatcher | 1688285541080 | 0 |
| testIsByAttribute | 1688285541080 | 1 |
| testIsByLabel | 1688285541081 | 0 |
| testIsByScore | 1688285541081 | 0 |
| testMatches_byAttribute | 1688285541081 | 0 |
| testMatches_byLabel | 1688285541081 | 1 |
| testMatches_byScore | 1688285541082 | 0 |
| testToStableString | 1688285541082 | 0 |
| testToString | 1688285541082 | 1 |
| jalview.datamodel.features.FeatureStoreTest | testAddFeature | 1688285551110 | 0 |
| testContains | 1688285551110 | 0 |
| testDelete | 1688285551111 | 0 |
| testDelete_readd | 1688285551111 | 0 |
| testFindFeatures_contactFeatures | 1688285551111 | 1 |
| testFindFeatures_mixed | 1688285551112 | 0 |
| testFindFeatures_nested | 1688285551112 | 0 |
| testFindFeatures_nonNested | 1688285551112 | 0 |
| testGetFeatureGroups | 1688285551112 | 1 |
| testGetFeatureLength | 1688285551113 | 0 |
| testGetFeaturesForGroup | 1688285551113 | 0 |
| testGetMinimumScore_getMaximumScore | 1688285551113 | 0 |
| testGetPositionalFeatures | 1688285551113 | 1 |
| testGetTotalFeatureLength | 1688285551114 | 0 |
| testIsEmpty | 1688285551114 | 0 |
| testListContains | 1688285551114 | 0 |
| testMax | 1688285551114 | 0 |
| testMin | 1688285551114 | 0 |
| testShiftFeatures | 1688285551114 | 1 |
| jalview.datamodel.features.SequenceFeaturesTest | testConstructor | 1688285615974 | 1 |
| testDelete | 1688285615975 | 0 |
| testDeleteAll | 1688285615975 | 0 |
| testFindFeatures | 1688285615975 | 0 |
| testGetAllFeatures | 1688285615975 | 0 |
| testGetContactFeatures | 1688285615975 | 0 |
| testGetFeatureCount | 1688285615975 | 1 |
| testGetFeatureGroups | 1688285615976 | 0 |
| testGetFeatureTypes | 1688285615976 | 0 |
| testGetFeatureTypesForGroups | 1688285615976 | 0 |
| testGetFeatureTypes_byOntology | 1688285615976 | 1 |
| testGetFeaturesByOntology | 1688285615977 | 0 |
| testGetFeaturesForGroup | 1688285615977 | 1 |
| testGetMinimumScore_getMaximumScore | 1688285615978 | 0 |
| testGetNonPositionalFeatures | 1688285615978 | 0 |
| testGetPositionalFeatures | 1688285615978 | 0 |
| testGetTotalFeatureLength | 1688285615979 | 0 |
| testHasFeatures | 1688285615979 | 0 |
| testIsOntologyTerm | 1688285615979 | 0 |
| testShiftFeatures | 1688285615979 | 1 |
| testSortFeatures | 1688285615980 | 0 |
| testVarargsToTypes | 1688285615980 | 0 |
| jalview.ext.android.SparseIntArrayTest | testAdd | 1688285501442 | 2 |
| testCheckOverflow | 1688285501445 | 0 |
| testPut | 1688285501445 | 1 |
| jalview.ext.android.SparseShortArrayTest | testAdd | 1688285501795 | 0 |
| testPut | 1688285501796 | 0 |
| jalview.ext.ensembl.EnsemblCdnaTest | testGetGenomicRangesFromFeatures | 1688285501892 | 3 |
| testGetGenomicRangesFromFeatures_mixedStrand | 1688285501895 | 1 |
| testGetGenomicRangesFromFeatures_reverseStrand | 1688285501896 | 1 |
| testGetIdentifyingFeatures | 1688285501897 | 0 |
| testIsValidReference | 1688285501898 | 0 |
| testRetainFeature | 1688285501898 | 1 |
| jalview.ext.ensembl.EnsemblCdsTest | testGetGenomicRangesFromFeatures | 1688285502294 | 0 |
| testGetIdentifyingFeatures | 1688285502295 | 0 |
| testIsValidReference | 1688285502295 | 1 |
| testRetainFeature | 1688285502296 | 0 |
| jalview.ext.ensembl.EnsemblGeneTest | testGetFeatureColourScheme | 1688285509475 | 2 |
| testGetGenomicRangesFromFeatures | 1688285509477 | 0 |
| testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand | 1688285509478 | 0 |
| testGetIdentifyingFeatures | 1688285509478 | 1 |
| testGetTranscriptFeatures | 1688285509479 | 0 |
| testRetainFeature | 1688285509479 | 1 |
| jalview.ext.ensembl.EnsemblGenomeTest | testGetGenomicRangesFromFeatures | 1688285514350 | 1 |
| testGetIdentifyingFeatures | 1688285514351 | 1 |
| testRetainFeature | 1688285514352 | 0 |
| jalview.ext.ensembl.EnsemblProteinTest | testGetAccesionIdFromQuery | 1688285516281 | 0 |
| testIsValidReference | 1688285516281 | 1 |
| jalview.ext.ensembl.EnsemblSeqProxyTest | getGenomicRangesFromFeatures | 1688285498291 | 0 |
| testReverseComplementAllele | 1688285498291 | 2 |
| testReverseComplementAlleles | 1688285498293 | 2 |
| jalview.ext.ensembl.EnsemblXrefTest | testGetCrossReferences | 1688285501562 | 2 |
| jalview.ext.htsjdk.TestHtsContigDb | testCreateFastaSequenceIndex | 1688285501446 | 38 |
| testGetSequenceProxy | 1688285501485 | 2 |
| testGetSequenceProxy_indexed | 1688285501488 | 1 |
| jalview.ext.htsjdk.VCFReaderTest | testQuery_plain | 1688285501797 | 69 |
| testReadVcf_plain | 1688285501866 | 2 |
| jalview.ext.jmol.JmolCommandsTest | testColourByChain | 1688285501919 | 1 |
| testColourByCharge | 1688285501920 | 0 |
| testColourBySequence | 1688285501921 | 1 |
| testFocusView | 1688285501923 | 0 |
| testGetAtomSpec | 1688285501923 | 1 |
| testGetColourBySequenceCommands_hiddenColumns | 1688285501924 | 30 |
| testGetModelStartNo | 1688285501955 | 0 |
| testLoadFile | 1688285501955 | 0 |
| testOpenSession | 1688285501956 | 0 |
| testSaveSession | 1688285501956 | 0 |
| testSetBackgroundColour | 1688285501956 | 1 |
| testShowBackbone | 1688285501957 | 0 |
| testSuperposeStructures | 1688285501958 | 0 |
| jalview.ext.jmol.JmolParserTest | testAlignmentLoader | 1688285502302 | 920 |
| testFileParser | 1688285503225 | 859 |
| testLocalPDBId | 1688285504086 | 209 |
| testParse_alternativeResidues | 1688285504297 | 230 |
| testParse_missingResidues | 1688285504529 | 243 |
| testSetSecondaryStructure | 1688285504776 | 0 |
| jalview.ext.jmol.JmolViewerTest | testAddStrToSingleSeqViewJMol | 1688285509573 | 2607 |
| testSingleSeqViewJMol | 1688285512180 | 871 |
| jalview.ext.pymol.PymolCommandsTest | testCloseViewer | 1688285501373 | 0 |
| testColourByChain | 1688285501374 | 0 |
| testColourByCharge | 1688285501374 | 0 |
| testColourBySequence | 1688285501375 | 0 |
| testColourResidues | 1688285501376 | 0 |
| testGetAtomSpec | 1688285501377 | 0 |
| testGetAtomSpec_alphaOnly | 1688285501378 | 0 |
| testGetModelStartNo | 1688285501379 | 0 |
| testGetResidueSpec | 1688285501379 | 1 |
| testLoadFile | 1688285501380 | 0 |
| testOpenCommandFile | 1688285501381 | 0 |
| testOpenSession | 1688285501381 | 1 |
| testSaveSession | 1688285501382 | 0 |
| testSetAttribute | 1688285501383 | 0 |
| testSetAttributes | 1688285501383 | 1 |
| testSetBackgroundColour | 1688285501384 | 1 |
| testShowBackbone | 1688285501385 | 0 |
| testSuperposeStructures | 1688285501386 | 1 |
| jalview.ext.pymol.PymolManagerTest | testGetPostRequest | 1688285501681 | 1 |
| testGetPymolPaths | 1688285501682 | 3 |
| jalview.ext.rbvi.chimera.ChimeraCommandsTest | testCloseViewer | 1688285501878 | 0 |
| testColourByChain | 1688285501878 | 0 |
| testColourByCharge | 1688285501878 | 1 |
| testColourBySequence | 1688285501879 | 0 |
| testFocusView | 1688285501880 | 0 |
| testGetAtomSpec | 1688285501880 | 1 |
| testGetAtomSpec_alphaOnly | 1688285501881 | 0 |
| testGetColourCommand | 1688285501882 | 0 |
| testGetModelStartNo | 1688285501882 | 0 |
| testGetResidueAttributes | 1688285501882 | 1 |
| testGetResidueSpec | 1688285501883 | 0 |
| testGetSelectedResidues | 1688285501883 | 1 |
| testListResidueAttributes | 1688285501884 | 0 |
| testLoadFile | 1688285501884 | 0 |
| testMakeAttributeName | 1688285501885 | 0 |
| testOpenCommandFile | 1688285501885 | 1 |
| testOpenSession | 1688285501886 | 0 |
| testSaveSession | 1688285501886 | 1 |
| testSetAttribute | 1688285501887 | 0 |
| testSetAttributes | 1688285501887 | 1 |
| testSetBackgroundColour | 1688285501888 | 0 |
| testShowBackbone | 1688285501888 | 1 |
| testStartNotifications | 1688285501889 | 0 |
| testStopNotifications | 1688285501890 | 0 |
| testSuperposeStructures | 1688285501890 | 0 |
| jalview.ext.rbvi.chimera.ChimeraXCommandsTest | testCloseViewer | 1688285498252 | 1 |
| testColourByChain | 1688285498253 | 0 |
| testColourByCharge | 1688285498254 | 0 |
| testColourBySequence | 1688285498255 | 9 |
| testFocusView | 1688285498265 | 0 |
| testGetAtomSpec | 1688285498266 | 1 |
| testGetAtomSpec_alphaOnly | 1688285498267 | 1 |
| testGetColourCommand | 1688285498268 | 0 |
| testGetModelStartNo | 1688285498269 | 0 |
| testGetResidueSpec | 1688285498269 | 0 |
| testGetSelectedResidues | 1688285498270 | 0 |
| testListResidueAttributes | 1688285498270 | 0 |
| testOpenCommandFile | 1688285498271 | 0 |
| testOpenSession | 1688285498271 | 1 |
| testSaveSession | 1688285498272 | 1 |
| testSetAttribute | 1688285498273 | 0 |
| testSetAttributes | 1688285498274 | 1 |
| testSetBackgroundColour | 1688285498275 | 1 |
| testShowBackbone | 1688285498276 | 0 |
| testStartNotifications | 1688285498277 | 0 |
| testStopNotifications | 1688285498278 | 0 |
| testSuperposeStructures | 1688285498278 | 1 |
| jalview.ext.so.SequenceOntologyTest | testIsA | 1688285501438 | 1 |
| testIsCDS | 1688285501440 | 0 |
| testIsSequenceVariant | 1688285501441 | 0 |
| jalview.fts.core.FTSRestClientTest | coverageForEqualsAndHashFunction | 1688285501565 | 4 |
| coverageForExceptionBranches | 1688285501569 | 3 |
| coverageForMiscellaneousBranches | 1688285501572 | 1 |
| getAllDefaulDisplayedDataColumns | 1688285501574 | 0 |
| getAllFTSDataColumns | 1688285501575 | 1 |
| getColumnClassTest | 1688285501576 | 2 |
| getColumnMaxWidthTest | 1688285501578 | 1 |
| getColumnMinWidthTest | 1688285501579 | 1 |
| getColumnPreferredWidthTest | 1688285501580 | 1 |
| getDataColumnByNameOrCode | 1688285501581 | 1 |
| getDataColumnGroupById | 1688285501583 | 0 |
| getDataColumnsFieldsAsCommaDelimitedString | 1688285501584 | 1 |
| getDefaultResponsePageSize | 1688285501586 | 0 |
| getPrimaryKeyColumIndexTest | 1688285501587 | 1 |
| getPrimaryKeyColumn | 1688285501588 | 1 |
| getSearchableDataColumns | 1688285501590 | 0 |
| jalview.fts.service.pdb.PDBFTSPanelTest | populateCmbSearchTargetOptionsTest | 1688285502011 | 87 |
| testDecodeSearchTerm | 1688285502099 | 1 |
| testgetPDBIdwithSpecifiedChain | 1688285502101 | 0 |
| jalview.fts.service.pdb.PDBFTSRestClientTest | getPDBDocFieldsAsCommaDelimitedStringTest | 1688285504776 | 1 |
| getPDBIdColumIndexTest | 1688285504777 | 0 |
| jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest | coverageForEqualsAndHashFunction | 1688285513543 | 0 |
| getAllFTSDataColumns | 1688285513544 | 0 |
| getColumnClassTest | 1688285513545 | 0 |
| getColumnMinWidthTest | 1688285513546 | 0 |
| getDataColumnByNameOrCode | 1688285513547 | 0 |
| getDataColumnGroupById | 1688285513548 | 0 |
| getDataColumnsFieldsAsCommaDelimitedString | 1688285513549 | 0 |
| getDefaultResponsePageSize | 1688285513550 | 0 |
| getPrimaryKeyColumIndexTest | 1688285513551 | 0 |
| getPrimaryKeyColumn | 1688285513551 | 1 |
| getSearchableDataColumns | 1688285513552 | 1 |
| getTDBIdColumIndexTest | 1688285513553 | 1 |
| testMockTDBRequest | 1688285513555 | 303 |
| jalview.fts.threedbeacons.TDBeaconsPanelTest | populateCmbSearchTargetOptionsTest | 1688285515100 | 68 |
| jalview.gui.AlignFrameTest | testChangeColour_background_groupsAndThresholds | 1688285515451 | 49 |
| testColourThresholdActions | 1688285515579 | 144 |
| testHideFeatureColumns | 1688285515802 | 19 |
| testNewView_colourThresholds | 1688285515896 | 247 |
| testNewView_dsRefPreserved | 1688285516228 | 39 |
| jalview.gui.AlignViewportTest | testDeregisterMapping_onCloseView | 1688285516559 | 101 |
| testDeregisterMapping_withNoReference | 1688285516661 | 49 |
| testDeregisterMapping_withReference | 1688285516710 | 94 |
| testGetConsensusSeq | 1688285516805 | 94 |
| testHideRevealSequences | 1688285516900 | 0 |
| testSetGetHasSearchResults | 1688285516901 | 51 |
| testSetGlobalColourScheme | 1688285516953 | 59 |
| testSetSelectionGroup | 1688285517012 | 75 |
| testShowOrDontShowOccupancy | 1688285517089 | 168 |
| testUpdateConservation_qualityOnly | 1688285517259 | 115 |
| jalview.gui.AlignmentPanelTest | testCalculateIdWidth_noArgs | 1688285518417 | 15 |
| testSetScrollValues | 1688285519081 | 2 |
| testUpdateLayout_endRes | 1688285519406 | 5 |
| jalview.gui.AnnotationChooserTest | testBuildActionButtonsPanel | 1688285520284 | 44 |
| testBuildApplyToOptionsPanel_noSelectionGroup | 1688285520348 | 15 |
| testBuildApplyToOptionsPanel_withSelectionGroup | 1688285520399 | 12 |
| testBuildShowHideOptionsPanel | 1688285520432 | 19 |
| testBuildShowHidePanel | 1688285520466 | 10 |
| testDeselectType_hideForAll | 1688285520494 | 32 |
| testDeselectType_hideForSelected | 1688285520545 | 13 |
| testDeselectType_showForAll | 1688285520576 | 12 |
| testDeselectType_showForSelected | 1688285520603 | 10 |
| testGetAnnotationTypes | 1688285520625 | 8 |
| testIsInActionScope_selectedScope | 1688285520646 | 6 |
| testIsInActionScope_unselectedScope | 1688285520664 | 9 |
| testResetOriginalState | 1688285520685 | 11 |
| testSelectType_hideForAll | 1688285520711 | 9 |
| testSelectType_hideForSelected | 1688285520733 | 19 |
| testSelectType_showForAll | 1688285520770 | 12 |
| testSelectType_showForSelected | 1688285520797 | 12 |
| jalview.gui.AnnotationColumnChooserTest | testReset | 1688285521049 | 129 |
| jalview.gui.AnnotationLabelsTest | testGetStatusMessage | 1688285522060 | 0 |
| testGetTooltip | 1688285522060 | 1 |
| jalview.gui.AnnotationPanelTest | testGetRowIndex | 1688285522238 | 0 |
| jalview.gui.AnnotationRowFilterTest | testGetAnnotationItems | 1688285527357 | 1 |
| jalview.gui.AppVarnaTest | testReplaceOddGaps | 1688285527559 | 5 |
| jalview.gui.CalculationChooserTest | testGetApplicableScoreModels | 1688285527738 | 1 |
| jalview.gui.ColourMenuHelperTest | testAddMenuItems_forAlignFrame | 1688285530798 | 12 |
| testAddMenuItems_nucleotide | 1688285530810 | 14 |
| testAddMenuItems_peptide | 1688285530824 | 1 |
| testAddMenuItems_simpleOnly | 1688285530825 | 1 |
| jalview.gui.FeatureSettingsTest | testGetColorTooltip | 1688285530913 | 3 |
| testSaveLoad | 1688285530916 | 55 |
| jalview.gui.HelpTest | checkHelpTargets | 1688285498384 | 29 |
| jalview.gui.JvOptionPaneTest | showConfirmDialogFamilyTest | 1688285499465 | 1 |
| showInputDialogFamilyTest | 1688285499466 | 1 |
| showInternalConfirmDialogFamilyTest | 1688285499467 | 176 |
| showInternalMessageDialogFamilyTest | 1688285499643 | 1 |
| showMessageDialogFamilyTest | 1688285499644 | 1 |
| jalview.gui.JvSwingUtilsTest | testGetScrollBarProportion | 1688285501676 | 1 |
| testGetScrollValueForProportion | 1688285501677 | 1 |
| testWrapTooltip_longText | 1688285501678 | 1 |
| testWrapTooltip_multilineShortText | 1688285501679 | 0 |
| testWrapTooltip_shortText | 1688285501680 | 0 |
| jalview.gui.PaintRefresherTest | testGetAssociatedPanels | 1688285502103 | 34 |
| testRegister | 1688285502140 | 1 |
| testRemoveComponent | 1688285502142 | 0 |
| jalview.gui.PairwiseAlignmentPanelTest | testConstructor_noSelectionGroup | 1688285505517 | 50 |
| testConstructor_withSelectionGroup | 1688285505567 | 36 |
| jalview.gui.PopupMenuTest | testAddFeatureDetails | 1688285513179 | 11 |
| testAddFeatureDetails_linkedFeatures | 1688285513218 | 0 |
| testBuildAnnotationTypesMenus | 1688285513245 | 1 |
| testBuildAnnotationTypesMenus_hideDisabled | 1688285513276 | 0 |
| testBuildAnnotationTypesMenus_showDisabled | 1688285513304 | 0 |
| testBuildLinkMenu | 1688285513334 | 6 |
| testConfigureReferenceAnnotationsMenu | 1688285513368 | 1 |
| testConfigureReferenceAnnotationsMenu_alreadyAdded | 1688285513394 | 0 |
| testConfigureReferenceAnnotationsMenu_noReferenceAnnotations | 1688285513420 | 0 |
| testConfigureReferenceAnnotationsMenu_noSequenceSelected | 1688285513446 | 0 |
| testConfigureReferenceAnnotationsMenu_notOnAlignment | 1688285513472 | 0 |
| testConfigureReferenceAnnotationsMenu_twoViews | 1688285513504 | 0 |
| testHideInsertions | 1688285513530 | 12 |
| jalview.gui.ProgressBarTest | testConstructor_prematureInstantiation | 1688285514901 | 0 |
| testConstructor_wrongLayout | 1688285514901 | 0 |
| testSetProgressBar | 1688285514902 | 70 |
| jalview.gui.ScalePanelTest | testBuildPopupMenu | 1688285516334 | 71 |
| testPreventNegativeStartColumn | 1688285516405 | 17 |
| testSelectColumns_withHidden | 1688285516422 | 24 |
| jalview.gui.SeqCanvasTest | testClear_HighlightAndSelection | 1688285517890 | 24 |
| jalview.gui.SeqPanelTest | testAmbiguousAminoAcidGetsStatusMessage | 1688285519483 | 54 |
| testFindColumn_unwrapped | 1688285519565 | 42 |
| testFindColumn_wrapped | 1688285519628 | 26 |
| testFindMousePosition_wrapped_annotations | 1688285519655 | 16 |
| testFindMousePosition_wrapped_noAnnotations | 1688285519673 | 27 |
| testFindMousePosition_wrapped_scaleAbove | 1688285519702 | 19 |
| testGetEditStatusMessage | 1688285519960 | 1 |
| testGetEditStatusMessage_lockedEditing | 1688285519961 | 0 |
| testSetStatusReturnsNearestResiduePosition | 1688285519962 | 14 |
| jalview.gui.SequenceRendererTest | testGetResidueColour_WithGroup | 1688285520978 | 0 |
| jalview.gui.StructureChooserTest | displayTDBQueryTest | 1688285521233 | 291 |
| fetchStructuresInfoMockedTest | 1688285521525 | 318 |
| populateFilterComboBoxTest | 1688285521844 | 171 |
| sanitizeSeqNameTest | 1688285522016 | 1 |
| jalview.gui.StructureViewerTest | testGetSequencesForPdbs | 1688285522234 | 0 |
| jalview.gui.structurechooser.StructureChooserQuerySourceTest | buildPDBQueryTest | 1688285522566 | 7 |
| buildThreeDBQueryTest | 1688285522574 | 22 |
| cascadingThreeDBandPDBQuerys | 1688285522597 | 368 |
| cascadingThreeDBandPDBQuerys |
| cascadingThreeDBandPDBQuerys |
| cascadingThreeDBandPDBQuerys |
| sanitizeSeqNameTest | 1688285525147 | 0 |
| jalview.io.AnnotatedPDBFileInputTest | checkAnnotationWiring | 1688285525609 | 1 |
| checkNoDuplicates | 1688285525992 | 1 |
| checkPDBSequenceFeatures | 1688285526313 | 1 |
| testJalviewProjectRelocationAnnotation | 1688285526636 | 700 |
| jalview.io.AnnotationFileIOTest | exampleAnnotationFileIO | 1688285527390 | 154 |
| testAnnotateAlignmentView | 1688285527545 | 14 |
| jalview.io.BackupFilesTest | backupsEnabledNoRollMaxTest | 1688285527594 | 48 |
| backupsEnabledReverseRollMaxTest | 1688285527642 | 37 |
| backupsEnabledRollMaxTest | 1688285527679 | 32 |
| backupsEnabledSingleFileBackupTest | 1688285527711 | 15 |
| noBackupsEnabledTest | 1688285527726 | 11 |
| jalview.io.BioJsHTMLOutputTest | expectedNullPointerException | 1688285527746 | 0 |
| getBioJsMSAVersions | 1688285527746 | 1 |
| getJalviewAlignmentAsJsonString | 1688285527747 | 3050 |
| jalview.io.ClustalFileTest | testParse_noNumbering | 1688285530910 | 1 |
| testParse_withNumbering | 1688285530911 | 1 |
| jalview.io.CrossRef2xmlTests | openCrossrefsForEnsemblTwice | 1688285531078 | 7674 |
| jalview.io.EmblFlatFileTest | testAdjustForProteinLength | 1688285538941 | 0 |
| testParse | 1688285538942 | 13 |
| testParseToRNA | 1688285538955 | 12 |
| testParse_codonStartNot1 | 1688285538968 | 0 |
| testParse_noUniprotXref | 1688285538968 | 0 |
| testRemoveQuotes | 1688285538968 | 0 |
| jalview.io.FeaturesFileTest | readGff3File | 1688285538978 | 2 |
| simpleGff3FileClass | 1688285538980 | 1 |
| simpleGff3FileLoader | 1688285538981 | 17 |
| simpleGff3RelaxedIdMatching | 1688285538999 | 1 |
| testOutputFeatureFilters | 1688285539000 | 1 |
| testParse | 1688285539001 | 38 |
| testParseFilters | 1688285539039 | 1 |
| testParse_jalviewFeaturesOnly | 1688285539040 | 16 |
| testParse_mixedJalviewGff | 1688285539056 | 18 |
| testParse_pureGff3 | 1688285539074 | 16 |
| testPrintGffFormat | 1688285539091 | 18 |
| testPrintGffFormat_withFilters | 1688285539110 | 15 |
| testPrintJalviewFormat | 1688285539125 | 18 |
| testPrintJalviewFormat_withFilters | 1688285539143 | 16 |
| jalview.io.FileFormatsTest | testDeregisterFileFormat | 1688285540975 | 0 |
| testForName | 1688285540975 | 0 |
| testGetFormats | 1688285540976 | 0 |
| testGetReadableFormats | 1688285540976 | 0 |
| testGetWritableFormats | 1688285540977 | 0 |
| testIsIdentifiable | 1688285540977 | 0 |
| testRegisterFileFormat | 1688285540977 | 1 |
| jalview.io.FileIOTester | testGzipIo | 1688285541084 | 1 |
| testGziplocalFileIO | 1688285541085 | 1 |
| testIsGzipInputStream | 1688285541086 | 0 |
| testNonGzipURLIO | 1688285541086 | 1 |
| testNonGziplocalFileIO | 1688285541087 | 0 |
| testStarsInFasta1 | 1688285541087 | 0 |
| testStarsInFasta2 | 1688285541087 | 0 |
| jalview.io.FormatAdapterTest | testRoundTrip | 1688285498300 | 3 |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| testRoundTrip |
| jalview.io.GenBankFileTest | testParse | 1688285501591 | 12 |
| jalview.io.IdentifyFileTest | testIdentify | 1688285498426 | 1 |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify |
| testIdentify_featureFile | 1688285498442 | 1 |
| testLooksLikeFeatureData | 1688285498443 | 1 |
| jalview.io.JSONFileTest | colorSchemeTest | 1688285501605 | 0 |
| hiddenColsTest | 1688285501606 | 0 |
| hiddenSeqsTest | 1688285501607 | 0 |
| isShowSeqFeaturesSet | 1688285501607 | 1 |
| roundTripTest | 1688285501608 | 0 |
| testAnnotationParsed | 1688285501609 | 0 |
| testBioJSONRoundTripWithColourSchemeNone | 1688285501610 | 30 |
| testGrpParsed | 1688285501641 | 1 |
| testGrpParsed_colourNone | 1688285501643 | 24 |
| testSeqParsed | 1688285501668 | 2 |
| jalview.io.JalviewExportPropertiesTests | testImportExportPeriodGaps | 1688285498891 | 412 |
| jalview.io.JalviewFileViewTest | testGetExtension | 1688285501670 | 0 |
| testGetImageIcon | 1688285501670 | 5 |
| testGetTypeDescription | 1688285501675 | 1 |
| jalview.io.NewickFileTests | testTreeIO | 1688285501987 | 8 |
| testTreeIO |
| testTreeIO |
| jalview.io.PfamFormatInputTest | testPfamFormatNoLimits | 1688285505604 | 0 |
| testPfamFormatValidLimits | 1688285505605 | 0 |
| jalview.io.PhylipFileTests | testInterleavedDataExtraction | 1688285513099 | 3 |
| testInterleavedIO | 1688285513102 | 17 |
| testSequentialDataExtraction | 1688285513120 | 2 |
| testSequentialIO | 1688285513123 | 6 |
| jalview.io.RNAMLfileTest | testRnamlToStockholmIO | 1688285514973 | 127 |
| jalview.io.ScoreMatrixFileTest | testParseMatrix_aaIndexBlosum80 | 1688285516446 | 1 |
| testParseMatrix_aaindexFormat | 1688285516450 | 0 |
| testParseMatrix_aaindex_extraDataLines | 1688285516453 | 1 |
| testParseMatrix_aaindex_mMissing | 1688285516456 | 0 |
| testParseMatrix_aaindex_rowColMismatch | 1688285516458 | 0 |
| testParseMatrix_aaindex_tooFewColumns | 1688285516460 | 0 |
| testParseMatrix_aaindex_tooManyRows | 1688285516462 | 0 |
| testParseMatrix_headerMissing | 1688285516464 | 0 |
| testParseMatrix_ncbiBadDelimiter | 1688285516466 | 0 |
| testParseMatrix_ncbiBadFloat | 1688285516468 | 0 |
| testParseMatrix_ncbiBadGuideCharacter | 1688285516470 | 0 |
| testParseMatrix_ncbiFormat | 1688285516472 | 0 |
| testParseMatrix_ncbiHeaderRepeated | 1688285516473 | 0 |
| testParseMatrix_ncbiMixedDelimiters | 1688285516475 | 0 |
| testParseMatrix_ncbiNameMissing | 1688285516476 | 3 |
| testParseMatrix_ncbiNotEnoughColumns | 1688285516481 | 1 |
| testParseMatrix_ncbiNotEnoughRows | 1688285516484 | 0 |
| testParseMatrix_ncbiTooManyColumns | 1688285516486 | 0 |
| testParseMatrix_ncbiTooManyRows | 1688285516488 | 0 |
| testParse_ncbiFormat | 1688285516490 | 0 |
| jalview.io.SequenceAnnotationReportTest | testAppendFeature_DescEqualsType | 1688285517914 | 0 |
| testAppendFeature_colouredByAttribute | 1688285517915 | 0 |
| testAppendFeature_disulfideBond | 1688285517915 | 1 |
| testAppendFeature_noScore | 1688285517916 | 0 |
| testAppendFeature_status | 1688285517916 | 0 |
| testAppendFeature_stripHtml | 1688285517917 | 0 |
| testAppendFeature_virtualFeature | 1688285517917 | 1 |
| testAppendFeature_withScore | 1688285517918 | 0 |
| testAppendFeature_withScoreStatusAttribute | 1688285517919 | 0 |
| testAppendFeatures_longText | 1688285517919 | 0 |
| testCreateSequenceAnnotationReport | 1688285517920 | 1 |
| testCreateSequenceAnnotationReport_withEllipsis | 1688285517921 | 2 |
| jalview.io.StockholmFileTest | curlyWUSSsecondaryStructureForRNASequence | 1688285519977 | 2 |
| dbrefOutput | 1688285519980 | 2 |
| detectWussBrackets | 1688285519982 | 0 |
| fullWUSSsecondaryStructureForRNASequence | 1688285519982 | 2 |
| pfamFileDataExtraction | 1688285519985 | 25 |
| pfamFileIO | 1688285520010 | 121 |
| rfamFileIO | 1688285520131 | 102 |
| secondaryStructureForRNASequence | 1688285520233 | 2 |
| stockholmFileRnaSSAlphaChars | 1688285520235 | 4 |
| stockholmFileRnaSSSpaceChars | 1688285520240 | 3 |
| testAnnotationEquivalence | 1688285520243 | 15 |
| jalview.io.TCoffeeScoreFileTest | testGetAsArray | 1688285520979 | 4 |
| testGetAsList | 1688285520983 | 1 |
| testHeightAndWidth | 1688285520986 | 1 |
| testHeightAndWidthWithResidueNumbers | 1688285520987 | 0 |
| testParse | 1688285520988 | 0 |
| testReadBlock | 1688285520989 | 0 |
| testReadHeader | 1688285520989 | 1 |
| testWrongFile | 1688285520990 | 1 |
| jalview.io.WindowsFileLoadAndSaveTest | loadAndSaveAlignment | 1688285522028 | 29 |
| jalview.io.cache.AppCacheTest | appCacheLimitTest | 1688285522061 | 0 |
| appCacheTest | 1688285522061 | 1 |
| jalview.io.cache.JvCacheableInputBoxTest | getUserInputTest | 1688285522248 | 102 |
| updateCacheTest | 1688285522350 | 200 |
| jalview.io.gff.ExonerateHelperTest | testAddExonerateGffToAlignment | 1688285527359 | 22 |
| testGetMappingType | 1688285527381 | 0 |
| testProcessGffSimilarity_protein2dna_forward_querygff | 1688285527381 | 0 |
| testProcessGffSimilarity_protein2dna_forward_targetgff | 1688285527382 | 0 |
| testProcessGffSimilarity_protein2dna_reverse_querygff | 1688285527382 | 0 |
| testProcessGffSimilarity_protein2dna_reverse_targetgff | 1688285527382 | 0 |
| jalview.io.gff.Gff3HelperTest | testGetDescription | 1688285527567 | 2 |
| testProcessCdnaMatch_forwardToForward | 1688285527569 | 1 |
| testProcessCdnaMatch_forwardToReverse | 1688285527570 | 0 |
| testProcessCdnaMatch_reverseToForward | 1688285527571 | 0 |
| testProcessCdnaMatch_spliced | 1688285527571 | 1 |
| jalview.io.gff.GffHelperBaseTest | testParseAttributeMap | 1688285527740 | 1 |
| testParseNameValuePairs | 1688285527741 | 0 |
| testTrimMapping | 1688285527742 | 0 |
| jalview.io.gff.GffHelperFactoryTest | testGetHelper | 1688285530827 | 1 |
| jalview.io.gff.GffTests | testResolveExonerateGff | 1688285530971 | 11 |
| jalview.io.gff.InterProScanHelperTest | testProcessProteinMatch | 1688285538932 | 1 |
| jalview.io.gff.SequenceOntologyLiteTest | testIsA_sequenceVariant | 1688285538970 | 0 |
| jalview.io.vcf.VCFLoaderTest | testDoLoad | 1688285540813 | 50 |
| testDoLoad_reverseStrand | 1688285540864 | 31 |
| testDoLoad_vepCsq | 1688285540895 | 65 |
| testLoadVCFContig | 1688285540960 | 9 |
| jalview.math.MatrixTest | testConstructor | 1688285540986 | 0 |
| testCopy | 1688285540986 | 0 |
| testEquals | 1688285540986 | 1 |
| testFindMinMax | 1688285540987 | 0 |
| testFindMinMax_timing | 1688285540987 | 82 |
| testMultiply | 1688285541070 | 0 |
| testPostMultiply | 1688285541070 | 0 |
| testPreMultiply | 1688285541070 | 0 |
| testPreMultiply_tooFewColumns | 1688285541070 | 1 |
| testPreMultiply_tooManyColumns | 1688285541071 | 0 |
| testReverseRange_maxToZero | 1688285541071 | 0 |
| testReverseRange_swapMinMax | 1688285541071 | 0 |
| testTred_reproducible | 1688285541072 | 1 |
| jalview.math.RotatableMatrixTest | testGetRotation | 1688285541101 | 0 |
| testPreMultiply | 1688285541102 | 0 |
| testPrint | 1688285541102 | 3 |
| testVectorMultiply | 1688285541105 | 0 |
| jalview.math.SparseMatrixTest | testConstructor | 1688285551115 | 1 |
| testFillRatio | 1688285551116 | 0 |
| testPostMultiply | 1688285551116 | 1 |
| testPreMultiply | 1688285551117 | 0 |
| testPreMultiply_sparseProduct | 1688285551117 | 0 |
| testPreMultiply_tooFewColumns | 1688285551117 | 1 |
| testPreMultiply_tooManyColumns | 1688285551118 | 0 |
| testTqli_matchesMatrix | 1688285551118 | 2 |
| testTranspose | 1688285551120 | 0 |
| testTred_matchesMatrix | 1688285551120 | 2 |
| testTred_reproducible | 1688285551122 | 4 |
| jalview.project.Jalview2xmlTests | gatherViewsHere | 1688285593653 | 3104 |
| noDuplicatePdbMappingsMade | 1688285596757 | 1894 |
| testColourByAnnotScores | 1688285598652 | 288 |
| testCopyViewSettings | 1688285598941 | 2209 |
| testIsVersionStringLaterThan | 1688285601150 | 1 |
| testMergeDatasetsforManyViews | 1688285601151 | 691 |
| testMergeDatasetsforViews | 1688285601842 | 138 |
| testPcaViewAssociation | 1688285601980 | 347 |
| testRNAStructureRecovery | 1688285602328 | 432 |
| testSaveLoadFeatureColoursAndFilters | 1688285602761 | 83 |
| testStoreAndRecoverColourThresholds | 1688285602844 | 134 |
| testStoreAndRecoverExpandedviews | 1688285602978 | 5410 |
| testStoreAndRecoverGeneLocus | 1688285608389 | 171 |
| testStoreAndRecoverGroupRepSeqs | 1688285608560 | 158 |
| testStoreAndRecoverPDBEntry | 1688285608718 | 590 |
| testStoreAndRecoverReferenceSeqSettings | 1688285609308 | 5011 |
| testTCoffeeScores | 1688285614319 | 156 |
| viewRefPdbAnnotation | 1688285614475 | 1456 |
| jalview.renderer.OverviewResColourFinderTest | testGetResidueBoxColour_none | 1688285501368 | 0 |
| testGetResidueBoxColour_userdef | 1688285501369 | 1 |
| testGetResidueBoxColour_zappo | 1688285501371 | 0 |
| jalview.renderer.ResidueColourFinderTest | testGetResidueColour_none | 1688285501686 | 0 |
| testGetResidueColour_userdef | 1688285501687 | 0 |
| testGetResidueColour_zappo | 1688285501688 | 0 |
| jalview.renderer.ResidueShaderTest | testAboveThreshold | 1688285502145 | 1 |
| testApplyConservation | 1688285502146 | 0 |
| testFindColour_gapColour | 1688285502146 | 2 |
| jalview.renderer.ScaleRendererTest | testCalculateMarks | 1688285505609 | 28 |
| jalview.renderer.seqfeatures.FeatureColourFinderTest | testFindFeatureAtEnd | 1688285509480 | 9 |
| testFindFeatureColour_contactFeature | 1688285509490 | 0 |
| testFindFeatureColour_featureGroupNotDisplayed | 1688285509490 | 1 |
| testFindFeatureColour_featureTypeNotDisplayed | 1688285509491 | 1 |
| testFindFeatureColour_gapPosition | 1688285509493 | 0 |
| testFindFeatureColour_graduatedFeatureColour | 1688285509494 | 0 |
| testFindFeatureColour_graduatedWithThreshold | 1688285509495 | 1 |
| testFindFeatureColour_multipleFeaturesAtPositionNoTransparency | 1688285509498 | 0 |
| testFindFeatureColour_nestedFeatures | 1688285509499 | 0 |
| testFindFeatureColour_noFeatures | 1688285509501 | 1 |
| testFindFeatureColour_noFeaturesShown | 1688285509502 | 0 |
| testFindFeatureColour_singleFeatureAtPosition | 1688285509503 | 0 |
| testFindFeatureColour_singleFeatureNotAtPosition | 1688285509504 | 0 |
| testFindFeatureColour_transparencySingleFeature | 1688285509505 | 1 |
| testFindFeatureColour_transparencyTwoFeatures | 1688285509507 | 1 |
| testNoFeaturesDisplayed | 1688285509509 | 0 |
| jalview.renderer.seqfeatures.FeatureRendererTest | testFilterFeaturesForDisplay | 1688285514352 | 36 |
| testFindAllFeatures | 1688285514389 | 50 |
| testFindComplementFeaturesAtResidue | 1688285514439 | 278 |
| testFindFeaturesAtColumn | 1688285514718 | 37 |
| testGetColour | 1688285514755 | 30 |
| testIsVisible | 1688285514785 | 114 |
| jalview.schemes.AnnotationColourGradientTest | testFindColour_aboveThreshold | 1688285516274 | 1 |
| testFindColour_belowThreshold | 1688285516275 | 0 |
| testFindColour_noThreshold | 1688285516276 | 0 |
| testFindColour_originalColours | 1688285516276 | 0 |
| testShadeCalculation_aboveThreshold | 1688285516276 | 1 |
| testShadeCalculation_belowThreshold | 1688285516277 | 0 |
| testShadeCalculation_noThreshold | 1688285516277 | 1 |
| jalview.schemes.Blosum62ColourSchemeTest | testFindColour | 1688285517375 | 1 |
| jalview.schemes.BuriedColourSchemeTest | testFindColour | 1688285519411 | 0 |
| jalview.schemes.ClustalxColourSchemeTest | testFindColour | 1688285520809 | 23 |
| testFindColour_ignoreGaps | 1688285520833 | 24 |
| jalview.schemes.ColourSchemePropertyTest | testGetColourName | 1688285521178 | 0 |
| testGetColourScheme | 1688285521179 | 1 |
| jalview.schemes.ColourSchemesTest | testGetColourScheme | 1688285522135 | 48 |
| testGetColourSchemes | 1688285522183 | 0 |
| testNameExists | 1688285522183 | 0 |
| testRegisterColourScheme | 1688285522183 | 41 |
| jalview.schemes.FeatureColourTest | testConstructors | 1688285522239 | 0 |
| testCopyConstructor | 1688285522239 | 0 |
| testGetColor_Graduated | 1688285522239 | 0 |
| testGetColor_GraduatedByAttributeValue | 1688285522239 | 0 |
| testGetColor_aboveBelowThreshold | 1688285522239 | 0 |
| testGetColor_colourByAttributeText | 1688285522240 | 0 |
| testGetColor_colourByLabel | 1688285522240 | 0 |
| testGetColor_simpleColour | 1688285522240 | 0 |
| testGetDescription | 1688285522240 | 3 |
| testIsOutwithThreshold | 1688285522243 | 0 |
| testParseJalviewFeatureColour | 1688285522243 | 2 |
| testToJalviewFormat | 1688285522245 | 1 |
| jalview.schemes.HelixColourSchemeTest | testFindColour | 1688285527382 | 0 |
| jalview.schemes.HydrophobicColourSchemeTest | testFindColour | 1688285527572 | 0 |
| jalview.schemes.JalviewColourSchemeTest | testGetSchemeClass | 1688285527742 | 0 |
| testToString | 1688285527742 | 0 |
| jalview.schemes.PIDColourSchemeTest | testFindColour | 1688285530828 | 1 |
| testFindColour_ignoreGaps | 1688285530829 | 63 |
| jalview.schemes.ResidueColourSchemeTest | testGetName | 1688285530982 | 1 |
| testIsApplicableTo | 1688285530983 | 0 |
| testIsApplicableTo_dynamicColourScheme | 1688285530984 | 3 |
| jalview.schemes.ResiduePropertiesTest | testCodonTranslate | 1688285538933 | 1 |
| testCodonTranslate_ambiguityCodes | 1688285538934 | 0 |
| testGetCanonicalAminoAcid | 1688285538934 | 2 |
| testGetDssp3State | 1688285538936 | 1 |
| testGetResidues_nucleotide | 1688285538937 | 0 |
| testGetResidues_peptide | 1688285538937 | 0 |
| testGetSingleCharacterCode | 1688285538937 | 0 |
| testPhysicoChemicalProperties | 1688285538937 | 1 |
| jalview.schemes.StrandColourSchemeTest | testFindColour | 1688285538970 | 0 |
| jalview.schemes.TurnColourSchemeTest | testFindColour | 1688285540811 | 0 |
| jalview.schemes.UserColourSchemeTest | testConstructor_coloursArray | 1688285541074 | 0 |
| testParseAppletParameter | 1688285541074 | 1 |
| testToAppletParameter | 1688285541075 | 0 |
| jalview.structure.AtomSpecModelTest | testGetRanges | 1688285541078 | 0 |
| jalview.structure.Mapping | compareTransferredToRefPDBAnnot | 1688285499646 | 1378 |
| mapFer1From3W5V | 1688285501024 | 341 |
| jalview.structure.StructureCommandTest | testEquals | 1688285501796 | 0 |
| jalview.structure.StructureMappingTest | testEquals | 1688285502148 | 1 |
| testGetPDBResNumRanges | 1688285502149 | 0 |
| jalview.structure.StructureSelectionManagerTest | testRegisterMapping | 1688285505710 | 7 |
| testRegisterMappings | 1688285505717 | 1 |
| testSetMapping_seqFeatures | 1688285505718 | 365 |
| jalview.structures.models.AAStructureBindingModelTest | testBuildColoursMap | 1688285506912 | 46 |
| testFindSuperposableResidues | 1688285507652 | 1 |
| testFindSuperposableResidues_hiddenColumn | 1688285508411 | 0 |
| testImportPDBPreservesChainMappings | 1688285509184 | 253 |
| jalview.urls.AppletUrlProviderFactoryTest | testCreateUrlProvider | 1688285514348 | 2 |
| jalview.urls.CustomUrlProviderTest | testDefaultUrl | 1688285516279 | 0 |
| testUrlLinks | 1688285516280 | 0 |
| jalview.urls.DesktopUrlProviderFactoryTest | testCreateUrlProvider | 1688285517381 | 1 |
| jalview.urls.IdentifiersUrlProviderTest | testDefaultUrl | 1688285519420 | 0 |
| testUrlLinks | 1688285519420 | 1 |
| jalview.urls.UrlLinkDisplayTest | getValue | 1688285520992 | 0 |
| testDescription | 1688285520992 | 0 |
| testDisplayColumnNames | 1688285520992 | 0 |
| testGetSetValue | 1688285520992 | 0 |
| testIsEditable | 1688285520992 | 1 |
| testName | 1688285520993 | 0 |
| testUrl | 1688285520993 | 0 |
| jalview.urls.UrlLinkTableModelTest | testColumns | 1688285522018 | 0 |
| testCounts | 1688285522019 | 0 |
| testDeletable | 1688285522020 | 0 |
| testEditable | 1688285522021 | 0 |
| testInitialisation | 1688285522021 | 0 |
| testRowDelete | 1688285522022 | 2 |
| testRowEditable | 1688285522024 | 0 |
| testRowInsert | 1688285522025 | 1 |
| testValues | 1688285522026 | 2 |
| jalview.urls.UrlProviderTest | testInitUrlProvider | 1688285522235 | 0 |
| testSetDefaultUrl | 1688285522236 | 0 |
| testSetDefaultUrlWrongly | 1688285522236 | 1 |
| jalview.util.ArrayUtilsTest | testReverseIntArray | 1688285522238 | 0 |
| jalview.util.CaseInsensitiveStringTest | testEquals | 1688285527358 | 0 |
| testHashcode | 1688285527358 | 1 |
| jalview.util.ColorUtilsTest | testBleachColour | 1688285527564 | 0 |
| testBrighterThan | 1688285527564 | 0 |
| testCreateColourFromName | 1688285527564 | 1 |
| testDarkerThan | 1688285527565 | 0 |
| testGetAWTColorFromName | 1688285527565 | 0 |
| testGetGraduatedColour | 1688285527565 | 0 |
| testParseColourString | 1688285527565 | 1 |
| testToTkCode | 1688285527566 | 0 |
| jalview.util.ComparisonTest | testIsGap | 1688285527739 | 1 |
| testIsNucleotide | 1688285527740 | 0 |
| testIsNucleotideSequence | 1688285527740 | 0 |
| testIsNucleotide_sequences | 1688285527740 | 0 |
| testIsSameResidue | 1688285527740 | 0 |
| testPID_includingGaps | 1688285527740 | 0 |
| testPID_ungappedOnly | 1688285527740 | 0 |
| jalview.util.DBRefUtilsTest | testGetCanonicalName | 1688285530826 | 1 |
| testParseToDbRef | 1688285530827 | 0 |
| testParseToDbRef_PDB | 1688285530827 | 0 |
| testSearchRefs_accessionid | 1688285530827 | 0 |
| testSearchRefs_noMapping | 1688285530827 | 0 |
| testSearchRefs_wildcardAccessionid | 1688285530827 | 0 |
| testSearchRefs_withMapping | 1688285530827 | 0 |
| testSelectRefs | 1688285530827 | 0 |
| jalview.util.DnaUtilsTest | testParseLocation | 1688285530912 | 1 |
| jalview.util.FormatTest | testAppendPercentage | 1688285538925 | 0 |
| testForm_float | 1688285538926 | 0 |
| testFormat_scientific | 1688285538927 | 3 |
| testFormat_scientific_overflow | 1688285538930 | 1 |
| testRepeat | 1688285538931 | 0 |
| jalview.util.JSONUtilsTest | testArrayToList | 1688285538969 | 0 |
| jalview.util.Log4jTest | testLog4j | 1688285539160 | 1628 |
| jalview.util.MapListTest | testAddMapList | 1688285540978 | 0 |
| testAddMapList_contiguous | 1688285540978 | 0 |
| testAddMapList_sameMap | 1688285540978 | 1 |
| testAddOffsetPositions | 1688285540979 | 0 |
| testAddRange | 1688285540979 | 0 |
| testCoalesceRanges | 1688285540979 | 0 |
| testConstructor | 1688285540979 | 0 |
| testConstructor_mergeRanges | 1688285540979 | 0 |
| testConstructor_withLists | 1688285540980 | 0 |
| testCountPositions | 1688285540980 | 0 |
| testEquals | 1688285540980 | 1 |
| testGetInverse | 1688285540981 | 0 |
| testGetMappedOffsetsForPositions | 1688285540981 | 0 |
| testGetOverlapsInFrom_withIntrons | 1688285540982 | 0 |
| testGetOverlapsInTo_withIntrons | 1688285540982 | 1 |
| testGetPositionsForOffsets | 1688285540983 | 0 |
| testGetRanges | 1688285540983 | 0 |
| testIsFromForwardStrand | 1688285540983 | 0 |
| testIsToForwardsStrand | 1688285540983 | 0 |
| testLocateInFrom_noIntrons | 1688285540983 | 1 |
| testLocateInFrom_reverseStrand | 1688285540984 | 0 |
| testLocateInFrom_withIntrons | 1688285540984 | 0 |
| testLocateInFrom_withOverlap | 1688285540984 | 0 |
| testLocateInTo_noIntrons | 1688285540984 | 1 |
| testLocateInTo_withIntrons | 1688285540985 | 0 |
| testLocateInTo_withOverlap | 1688285540985 | 0 |
| testToString | 1688285540985 | 0 |
| testTraverse | 1688285540985 | 1 |
| testTraverseToPosition | 1688285540986 | 0 |
| jalview.util.MappingUtilsTest | testBuildSearchResults | 1688285541088 | 0 |
| testBuildSearchResults_withIntron | 1688285541088 | 0 |
| testContains | 1688285541089 | 0 |
| testFindMappingsForSequence | 1688285541089 | 0 |
| testFindMappingsForSequenceAndOthers | 1688285541089 | 0 |
| testFindOverlap | 1688285541089 | 0 |
| testFlattenRanges | 1688285541089 | 0 |
| testFlattenRanges_reverseStrand | 1688285541089 | 1 |
| testGetLength | 1688285541090 | 0 |
| testMapColumnSelection_dnaToProtein | 1688285541090 | 1 |
| testMapColumnSelection_hiddenColumns | 1688285541091 | 1 |
| testMapColumnSelection_null | 1688285541092 | 1 |
| testMapColumnSelection_proteinToDna | 1688285541093 | 1 |
| testMapEditCommand | 1688285541094 | 0 |
| testMapSequenceGroup_columns | 1688285541094 | 1 |
| testMapSequenceGroup_region | 1688285541095 | 1 |
| testMapSequenceGroup_sequences | 1688285541097 | 0 |
| testMapSequenceGroup_sharedDataset | 1688285541098 | 1 |
| testRangeContains | 1688285541099 | 0 |
| testRemoveEndPositions | 1688285541099 | 0 |
| testRemoveStartPositions | 1688285541099 | 0 |
| testRemoveStartPositions_reverseStrand | 1688285541099 | 0 |
| jalview.util.MathUtilsTest | testGcd | 1688285551115 | 0 |
| jalview.util.MessageManagerTest | testFormatMessage_invalid | 1688285615973 | 1 |
| testGetStringOrReturn | 1688285615974 | 0 |
| testGetString_invalid | 1688285615974 | 0 |
| jalview.util.ParseHtmlBodyAndLinksTest | testParseHtml_noLinks | 1688285616809 | 1 |
| testParseHtml_withLinks | 1688285616810 | 0 |
| testParseHtml_withLinksWithEncoding | 1688285616810 | 0 |
| testParseHtml_withLinksWithParameters | 1688285616810 | 0 |
| jalview.util.PlatformTest | testEscapeBackslashes | 1688285623837 | 0 |
| testIsControlDown_mac | 1688285623837 | 0 |
| testIsControlDown_notMac | 1688285623837 | 1 |
| testPathEquals | 1688285623838 | 0 |
| jalview.util.QuickSortTest | testCharSortByFloat | 1688285623848 | 1 |
| testCharSortByInt | 1688285623849 | 0 |
| testSortByInt | 1688285623849 | 0 |
| testSortByString | 1688285623849 | 1 |
| testSort_byDoubleValues | 1688285623850 | 0 |
| testSort_byFloatValues | 1688285623850 | 0 |
| testSort_byIntValues | 1688285623851 | 0 |
| testSort_byStringValues | 1688285623851 | 0 |
| testSort_charSortByFloat_mostlyZeroValues | 1688285623851 | 0 |
| testSort_charSortByInt_mostlyZeroValues | 1688285623851 | 0 |
| jalview.util.SetUtilsTest | testCountDisjunction | 1688285623856 | 0 |
| jalview.util.ShiftListTest | testParseMap | 1688285623897 | 0 |
| jalview.util.SparseCountTest | testAdd | 1688285623898 | 0 |
| testKeyAt_ValueAt | 1688285623898 | 0 |
| testOverflow | 1688285623898 | 0 |
| testPut | 1688285623898 | 0 |
| testUnderflow | 1688285623898 | 1 |
| jalview.util.StringUtilsTest | testArrayToSeparatorList | 1688285623953 | 0 |
| testCompareVersions | 1688285623953 | 0 |
| testDeleteChars | 1688285623953 | 0 |
| testGetLastToken | 1688285623953 | 0 |
| testInsertCharAt | 1688285623953 | 1 |
| testListToDelimitedString | 1688285623954 | 0 |
| testParseInt | 1688285623954 | 0 |
| testSeparatorListToArray | 1688285623954 | 1 |
| testStripHtmlTags | 1688285623955 | 0 |
| testToSentenceCase | 1688285623955 | 0 |
| testUrlDecode | 1688285623955 | 0 |
| testUrlEncode | 1688285623955 | 1 |
| jalview.util.UrlLinkTest | testCreateLinksForNonDynamic | 1688285623960 | 0 |
| testCreateLinksFromNullSequence | 1688285623960 | 0 |
| testCreateLinksFromSequence | 1688285623960 | 1 |
| testLinkComparator | 1688285623961 | 0 |
| testLinksWithTargets | 1688285623961 | 0 |
| testMakeUrlNoRegex | 1688285623961 | 1 |
| testMakeUrlWithRegex | 1688285623962 | 10 |
| testUrlLinkCreationNoRegex | 1688285623972 | 0 |
| testUrlLinkCreationWithRegex | 1688285623973 | 0 |
| jalview.util.matcher.ConditionTest | testFromString | 1688285623975 | 0 |
| testGetStableName | 1688285623975 | 0 |
| testToString | 1688285623975 | 0 |
| jalview.util.matcher.MatcherTest | testConstructor | 1688285623976 | 1 |
| testEquals | 1688285623977 | 1 |
| testHashCode | 1688285623978 | 0 |
| testMatches_float | 1688285623978 | 0 |
| testMatches_floatValueIntegerCondition | 1688285623978 | 0 |
| testMatches_floatWithStringCondition | 1688285623978 | 0 |
| testMatches_long | 1688285623978 | 1 |
| testMatches_pattern | 1688285623979 | 0 |
| testNumericMatch_nullOrInvalidValue | 1688285623979 | 1 |
| testToString | 1688285623980 | 0 |
| jalview.viewmodel.OverviewDimensionsHideHiddenTest | testConstructor | 1688285624003 | 0 |
| testDragging | 1688285624004 | 1 |
| testFromMouseWithHiddenColsAtEnd | 1688285624007 | 1 |
| testFromMouseWithHiddenColsAtStart | 1688285624009 | 1 |
| testFromMouseWithHiddenColsInMiddle | 1688285624011 | 2 |
| testFromMouseWithHiddenRowsAtEnd | 1688285624014 | 2 |
| testFromMouseWithHiddenRowsAtStart | 1688285624017 | 0 |
| testFromMouseWithHiddenRowsInMiddle | 1688285624019 | 0 |
| testPositionInBox | 1688285624021 | 0 |
| testSetBoxFromMouseClick | 1688285624022 | 2 |
| testSetBoxFromViewport | 1688285624025 | 0 |
| testSetBoxFromViewportHiddenColsAtEnd | 1688285624026 | 1 |
| testSetBoxFromViewportHiddenColsAtStart | 1688285624028 | 0 |
| testSetBoxFromViewportHiddenColsInMiddle | 1688285624030 | 0 |
| testSetBoxFromViewportHiddenRowsAtEnd | 1688285624031 | 2 |
| testSetBoxFromViewportHiddenRowsAtStart | 1688285624035 | 1 |
| testSetBoxFromViewportHiddenRowsInMiddle | 1688285624037 | 1 |
| jalview.viewmodel.OverviewDimensionsShowHiddenTest | testConstructor | 1688285624106 | 0 |
| testDragging | 1688285624107 | 1 |
| testFromMouseWithHiddenColsAtEnd | 1688285624109 | 1 |
| testFromMouseWithHiddenColsAtStart | 1688285624111 | 0 |
| testFromMouseWithHiddenColsInMiddle | 1688285624112 | 1 |
| testFromMouseWithHiddenRowsAtEnd | 1688285624114 | 2 |
| testFromMouseWithHiddenRowsAtStart | 1688285624117 | 0 |
| testFromMouseWithHiddenRowsAtStartWrapped | 1688285624118 | 1 |
| testFromMouseWithHiddenRowsInMiddle | 1688285624119 | 1 |
| testPositionInBox | 1688285624121 | 0 |
| testSetBoxFromMouseClick | 1688285624122 | 2 |
| testSetBoxFromViewport | 1688285624125 | 1 |
| testSetBoxFromViewportHiddenColsAtEnd | 1688285624127 | 0 |
| testSetBoxFromViewportHiddenColsAtStart | 1688285624129 | 0 |
| testSetBoxFromViewportHiddenColsInMiddle | 1688285624130 | 1 |
| testSetBoxFromViewportHiddenRowsAtEnd | 1688285624133 | 1 |
| testSetBoxFromViewportHiddenRowsAtStart | 1688285624135 | 1 |
| testSetBoxFromViewportHiddenRowsInMiddle | 1688285624136 | 1 |
| jalview.viewmodel.ViewportRangesTest | testEventFiring | 1688285624152 | 1 |
| testGetAbsoluteAlignmentHeight | 1688285624153 | 0 |
| testGetAbsoluteAlignmentWidth | 1688285624153 | 0 |
| testGetWrappedMaxScroll | 1688285624153 | 1 |
| testGetWrappedScrollPosition | 1688285624154 | 1 |
| testPageUpDown | 1688285624155 | 0 |
| testPageUpDownWrapped | 1688285624155 | 1 |
| testScrollRight | 1688285624156 | 0 |
| testScrollRightWithHidden | 1688285624156 | 0 |
| testScrollToVisible | 1688285624156 | 1 |
| testScrollToWrappedVisible | 1688285624157 | 0 |
| testScrollUp | 1688285624157 | 0 |
| testScrollUpWithHidden | 1688285624157 | 0 |
| testScrollUp_wrapped | 1688285624157 | 1 |
| testSetEndSeq | 1688285624158 | 0 |
| testSetStartEndRes | 1688285624159 | 0 |
| testSetStartEndResWrapped | 1688285624159 | 0 |
| testSetStartEndSeq | 1688285624159 | 0 |
| testSetStartRes | 1688285624159 | 0 |
| testSetStartResAndSeq | 1688285624159 | 0 |
| testSetStartSeq | 1688285624160 | 0 |
| testSetViewportHeight | 1688285624160 | 0 |
| testSetViewportLocation | 1688285624160 | 1 |
| testSetViewportStartAndHeight | 1688285624161 | 0 |
| testSetViewportStartAndWidth | 1688285624161 | 0 |
| testSetViewportStartAndWidthWrapped | 1688285624161 | 0 |
| testSetViewportWidth | 1688285624162 | 0 |
| testViewportRanges | 1688285624162 | 0 |
| jalview.viewmodel.styles.ViewStyleTest | testCopyConstructor | 1688285624163 | 1 |
| testEquals | 1688285624164 | 0 |
| jalview.workers.AlignCalcManagerTest | testRemoveWorkerForAnnotation | 1688285624174 | 101 |
| jalview.ws.SequenceFetcherTest | testNoDuplicatesInFetchDbRefs | 1688285501395 | 0 |
| jalview.ws.dbsources.EmblXmlSourceTest | testAdjustForProteinLength | 1688285501503 | 3 |
| testGetCdsRanges | 1688285501506 | 1 |
| testGetEmblEntries | 1688285501508 | 31 |
| testGetSequence | 1688285501540 | 22 |
| jalview.ws.dbsources.PfamFullTest | testGetURL | 1688285502144 | 1 |
| jalview.ws.dbsources.PfamSeedTest | testGetURL | 1688285505608 | 0 |
| jalview.ws.dbsources.RfamFullTest | testGetURL | 1688285501393 | 1 |
| jalview.ws.dbsources.RfamSeedTest | testGetURL | 1688285501691 | 0 |
| jalview.ws.dbsources.UniprotTest | testGetDescription | 1688285502150 | 2 |
| testGetUniprotEntries | 1688285502152 | 64 |
| testGetUniprotEntryDescription | 1688285502216 | 21 |
| testGetUniprotEntryId | 1688285502237 | 26 |
| testGetUniprotSequence | 1688285502264 | 24 |
| jalview.ws.ebi.EBIFetchClientTest | testBuildUrl | 1688285498283 | 5 |
| testParseIds | 1688285498289 | 0 |
| jalview.ws.rest.RestClientTest | testGetRestClient | 1688285501387 | 4 |
| jalview.ws.rest.ShmmrRSBSService | testShmmrService | 1688285501692 | 0 |
| testShmmrServiceDataprep | 1688285501693 | 101 |
| jalview.ws.seqfetcher.DbRefFetcherTest | testStandardProtDbs | 1688285501891 | 0 |
| mc_view.AtomTest | testStringConstructor | 1688285498246 | 1 |
| testStringConstructor_blankOccupancyTempFactor | 1688285498247 | 1 |
| testStringConstructor_malformed | 1688285498248 | 1 |
| mc_view.BondTest | testTranslate | 1688285501501 | 1 |
| mc_view.PDBChainTest | testGetChargeColour | 1688285502001 | 0 |
| testGetNewlineString | 1688285502001 | 1 |
| testMakeBond | 1688285502002 | 0 |
| testMakeCaBondList | 1688285502003 | 0 |
| testMakeCaBondList_nucleotide | 1688285502003 | 1 |
| testMakeExactMapping | 1688285502004 | 0 |
| testMakeResidueList_noAnnotation | 1688285502005 | 1 |
| testMakeResidueList_withTempFactor | 1688285502007 | 0 |
| testPrint | 1688285502008 | 0 |
| testSetChainColours_colour | 1688285502009 | 0 |
| testSetChainColours_colourScheme | 1688285502010 | 0 |
| testSetChargeColours | 1688285502010 | 1 |
| mc_view.PDBfileTest | testIsRna | 1688285504779 | 1 |
| testParse | 1688285504782 | 12 |
| testParse_withAnnotations_noSS | 1688285504796 | 11 |
| testParse_withJmolAddAlignmentAnnotations | 1688285504809 | 320 |
| testParse_withJmol_noAnnotations | 1688285505131 | 386 |
| mc_view.ResidueTest | testFindAtom | 1688285513542 | 0 |